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DIAGENODE DIAGNOSTICS bioruptor plustm
Bioruptor Plustm, supplied by DIAGENODE DIAGNOSTICS, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/bioruptor+plustm/bioruptor+pico/10__1016_slash_j__scienta__2024__113865-104-34-36
Average 90 stars, based on 1 article reviews
bioruptor plustm - by Bioz Stars, 2026-10
90/100 stars

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Saline:

Article Title: Identifying Cell-Type-Specific Metabolic Signatures Using Transcriptome and Proteome Analyses.
Article Snippet: .. Materials Intestinal crypts from step 17 of Basic Protocol 1 Crypt digestion buffer (see recipe; prepare 3 ml/sample) Phosphate-buffered saline (PBS; PBS Tablets; Gibco, cat. no. 18912014, to be dissolved in 500 ml deionized water; keep on ice) Y-27632 dihydrochloride monohydrate (Abcam ab120129) 2× proteomics lysis buffer (see recipe) 1 M dithiothreitol (DTT; Roth 6908.3) 200 mM iodoacetamide (Sigma I1149); prepare fresh directly before use and keep in the dark (cannot be stored)Gebert et al. 8 of 29 Current Protocols Acetone (Biosolve 0001037801BS), ice-cold HPLC water (Sigma 270733) Protein digestion buffer (see recipe) LysC stock solution (see recipe) Trypsin stock solution (see recipe) 10% trifluoroacetic acid (Biosolve 0020234131BS) Acetonitrile (Biosolve 0001204102BS) Formic acid (Roth 4724.3) HRM kit peptides (Biognosys AG 42896) 50-ml conical tubes (e.g., Corning Falcon) 1.5-ml microcentrifuge tubes (Eppendorf 0030120.086) 37°C water bath Centrifuge with temperature control (Eppendorf 5804R) 70-μm mesh filters Bioruptor PlusTM (Diagenode) Thermomixer (Eppendorf 460-0223E and 460-0220) pH paper (Roth KEE1.1) Waters Oasis® HLB μElution Plate, 30 μm (Waters 186001828BA) Extraction Plate Manifold for Oasis 96-Well Plates (Waters 186001831) Vacuum pump (Gast Manufacturing Inc. DOA P504 PN) Speed vacuum centrifuge (Eppendorf Concentrator Plus) PCR tubes (Ratiolab 8610040) MS vials (VDS Optilab 93909134) nanoAcquity UPLC system (Waters) Trapping column (nanoAcquity Symmetry C18, 5 μm, 180 μm × 20 mm; Waters) Analytical column (nanoAcquity BEH C18, 1.7 μm, 75 μm × 250 mm; Waters) Orbitrap Fusion Lumos Tribrid Mass Spectrometer (ThermoFisher Scientific) The outlet of the column needs to be coupled directly to the Orbitrap Fusion Lumos (ThermoFisher Scientific) using the Proxeon nanospray source. .. SpectronautTM v.14 R v3.6.3 R Studio Server v1.2.5042 Isolating targeted cell populations for proteome analysis In order to avoid contamination of the sample, nitrile gloves should be used throughout all the protocol steps.

Lysis:

Article Title: Identifying Cell-Type-Specific Metabolic Signatures Using Transcriptome and Proteome Analyses.
Article Snippet: .. Materials Intestinal crypts from step 17 of Basic Protocol 1 Crypt digestion buffer (see recipe; prepare 3 ml/sample) Phosphate-buffered saline (PBS; PBS Tablets; Gibco, cat. no. 18912014, to be dissolved in 500 ml deionized water; keep on ice) Y-27632 dihydrochloride monohydrate (Abcam ab120129) 2× proteomics lysis buffer (see recipe) 1 M dithiothreitol (DTT; Roth 6908.3) 200 mM iodoacetamide (Sigma I1149); prepare fresh directly before use and keep in the dark (cannot be stored)Gebert et al. 8 of 29 Current Protocols Acetone (Biosolve 0001037801BS), ice-cold HPLC water (Sigma 270733) Protein digestion buffer (see recipe) LysC stock solution (see recipe) Trypsin stock solution (see recipe) 10% trifluoroacetic acid (Biosolve 0020234131BS) Acetonitrile (Biosolve 0001204102BS) Formic acid (Roth 4724.3) HRM kit peptides (Biognosys AG 42896) 50-ml conical tubes (e.g., Corning Falcon) 1.5-ml microcentrifuge tubes (Eppendorf 0030120.086) 37°C water bath Centrifuge with temperature control (Eppendorf 5804R) 70-μm mesh filters Bioruptor PlusTM (Diagenode) Thermomixer (Eppendorf 460-0223E and 460-0220) pH paper (Roth KEE1.1) Waters Oasis® HLB μElution Plate, 30 μm (Waters 186001828BA) Extraction Plate Manifold for Oasis 96-Well Plates (Waters 186001831) Vacuum pump (Gast Manufacturing Inc. DOA P504 PN) Speed vacuum centrifuge (Eppendorf Concentrator Plus) PCR tubes (Ratiolab 8610040) MS vials (VDS Optilab 93909134) nanoAcquity UPLC system (Waters) Trapping column (nanoAcquity Symmetry C18, 5 μm, 180 μm × 20 mm; Waters) Analytical column (nanoAcquity BEH C18, 1.7 μm, 75 μm × 250 mm; Waters) Orbitrap Fusion Lumos Tribrid Mass Spectrometer (ThermoFisher Scientific) The outlet of the column needs to be coupled directly to the Orbitrap Fusion Lumos (ThermoFisher Scientific) using the Proxeon nanospray source. .. SpectronautTM v.14 R v3.6.3 R Studio Server v1.2.5042 Isolating targeted cell populations for proteome analysis In order to avoid contamination of the sample, nitrile gloves should be used throughout all the protocol steps.

Article Title: Transcription factor Constans-like 4 may regulate tomato fruit ripening by interacting with abscisic acid and ethylene signaling
Article Snippet: .. The sediment obtained was mixed with 0.4 mL of nucleic acid lysis buffer containing protease inhibitors, lysed on ice for 30 min, and sonicated into fragments ranging from 200 to 700 bp with a Bioruptor PlusTM (Diagenode Inc., Denville, NJ) at high power for 40 cycles (30 s on, 30 s off). ..

High Performance Liquid Chromatography:

Article Title: Identifying Cell-Type-Specific Metabolic Signatures Using Transcriptome and Proteome Analyses.
Article Snippet: .. Materials Intestinal crypts from step 17 of Basic Protocol 1 Crypt digestion buffer (see recipe; prepare 3 ml/sample) Phosphate-buffered saline (PBS; PBS Tablets; Gibco, cat. no. 18912014, to be dissolved in 500 ml deionized water; keep on ice) Y-27632 dihydrochloride monohydrate (Abcam ab120129) 2× proteomics lysis buffer (see recipe) 1 M dithiothreitol (DTT; Roth 6908.3) 200 mM iodoacetamide (Sigma I1149); prepare fresh directly before use and keep in the dark (cannot be stored)Gebert et al. 8 of 29 Current Protocols Acetone (Biosolve 0001037801BS), ice-cold HPLC water (Sigma 270733) Protein digestion buffer (see recipe) LysC stock solution (see recipe) Trypsin stock solution (see recipe) 10% trifluoroacetic acid (Biosolve 0020234131BS) Acetonitrile (Biosolve 0001204102BS) Formic acid (Roth 4724.3) HRM kit peptides (Biognosys AG 42896) 50-ml conical tubes (e.g., Corning Falcon) 1.5-ml microcentrifuge tubes (Eppendorf 0030120.086) 37°C water bath Centrifuge with temperature control (Eppendorf 5804R) 70-μm mesh filters Bioruptor PlusTM (Diagenode) Thermomixer (Eppendorf 460-0223E and 460-0220) pH paper (Roth KEE1.1) Waters Oasis® HLB μElution Plate, 30 μm (Waters 186001828BA) Extraction Plate Manifold for Oasis 96-Well Plates (Waters 186001831) Vacuum pump (Gast Manufacturing Inc. DOA P504 PN) Speed vacuum centrifuge (Eppendorf Concentrator Plus) PCR tubes (Ratiolab 8610040) MS vials (VDS Optilab 93909134) nanoAcquity UPLC system (Waters) Trapping column (nanoAcquity Symmetry C18, 5 μm, 180 μm × 20 mm; Waters) Analytical column (nanoAcquity BEH C18, 1.7 μm, 75 μm × 250 mm; Waters) Orbitrap Fusion Lumos Tribrid Mass Spectrometer (ThermoFisher Scientific) The outlet of the column needs to be coupled directly to the Orbitrap Fusion Lumos (ThermoFisher Scientific) using the Proxeon nanospray source. .. SpectronautTM v.14 R v3.6.3 R Studio Server v1.2.5042 Isolating targeted cell populations for proteome analysis In order to avoid contamination of the sample, nitrile gloves should be used throughout all the protocol steps.

Control:

Article Title: Identifying Cell-Type-Specific Metabolic Signatures Using Transcriptome and Proteome Analyses.
Article Snippet: .. Materials Intestinal crypts from step 17 of Basic Protocol 1 Crypt digestion buffer (see recipe; prepare 3 ml/sample) Phosphate-buffered saline (PBS; PBS Tablets; Gibco, cat. no. 18912014, to be dissolved in 500 ml deionized water; keep on ice) Y-27632 dihydrochloride monohydrate (Abcam ab120129) 2× proteomics lysis buffer (see recipe) 1 M dithiothreitol (DTT; Roth 6908.3) 200 mM iodoacetamide (Sigma I1149); prepare fresh directly before use and keep in the dark (cannot be stored)Gebert et al. 8 of 29 Current Protocols Acetone (Biosolve 0001037801BS), ice-cold HPLC water (Sigma 270733) Protein digestion buffer (see recipe) LysC stock solution (see recipe) Trypsin stock solution (see recipe) 10% trifluoroacetic acid (Biosolve 0020234131BS) Acetonitrile (Biosolve 0001204102BS) Formic acid (Roth 4724.3) HRM kit peptides (Biognosys AG 42896) 50-ml conical tubes (e.g., Corning Falcon) 1.5-ml microcentrifuge tubes (Eppendorf 0030120.086) 37°C water bath Centrifuge with temperature control (Eppendorf 5804R) 70-μm mesh filters Bioruptor PlusTM (Diagenode) Thermomixer (Eppendorf 460-0223E and 460-0220) pH paper (Roth KEE1.1) Waters Oasis® HLB μElution Plate, 30 μm (Waters 186001828BA) Extraction Plate Manifold for Oasis 96-Well Plates (Waters 186001831) Vacuum pump (Gast Manufacturing Inc. DOA P504 PN) Speed vacuum centrifuge (Eppendorf Concentrator Plus) PCR tubes (Ratiolab 8610040) MS vials (VDS Optilab 93909134) nanoAcquity UPLC system (Waters) Trapping column (nanoAcquity Symmetry C18, 5 μm, 180 μm × 20 mm; Waters) Analytical column (nanoAcquity BEH C18, 1.7 μm, 75 μm × 250 mm; Waters) Orbitrap Fusion Lumos Tribrid Mass Spectrometer (ThermoFisher Scientific) The outlet of the column needs to be coupled directly to the Orbitrap Fusion Lumos (ThermoFisher Scientific) using the Proxeon nanospray source. .. SpectronautTM v.14 R v3.6.3 R Studio Server v1.2.5042 Isolating targeted cell populations for proteome analysis In order to avoid contamination of the sample, nitrile gloves should be used throughout all the protocol steps.

Extraction:

Article Title: Identifying Cell-Type-Specific Metabolic Signatures Using Transcriptome and Proteome Analyses.
Article Snippet: .. Materials Intestinal crypts from step 17 of Basic Protocol 1 Crypt digestion buffer (see recipe; prepare 3 ml/sample) Phosphate-buffered saline (PBS; PBS Tablets; Gibco, cat. no. 18912014, to be dissolved in 500 ml deionized water; keep on ice) Y-27632 dihydrochloride monohydrate (Abcam ab120129) 2× proteomics lysis buffer (see recipe) 1 M dithiothreitol (DTT; Roth 6908.3) 200 mM iodoacetamide (Sigma I1149); prepare fresh directly before use and keep in the dark (cannot be stored)Gebert et al. 8 of 29 Current Protocols Acetone (Biosolve 0001037801BS), ice-cold HPLC water (Sigma 270733) Protein digestion buffer (see recipe) LysC stock solution (see recipe) Trypsin stock solution (see recipe) 10% trifluoroacetic acid (Biosolve 0020234131BS) Acetonitrile (Biosolve 0001204102BS) Formic acid (Roth 4724.3) HRM kit peptides (Biognosys AG 42896) 50-ml conical tubes (e.g., Corning Falcon) 1.5-ml microcentrifuge tubes (Eppendorf 0030120.086) 37°C water bath Centrifuge with temperature control (Eppendorf 5804R) 70-μm mesh filters Bioruptor PlusTM (Diagenode) Thermomixer (Eppendorf 460-0223E and 460-0220) pH paper (Roth KEE1.1) Waters Oasis® HLB μElution Plate, 30 μm (Waters 186001828BA) Extraction Plate Manifold for Oasis 96-Well Plates (Waters 186001831) Vacuum pump (Gast Manufacturing Inc. DOA P504 PN) Speed vacuum centrifuge (Eppendorf Concentrator Plus) PCR tubes (Ratiolab 8610040) MS vials (VDS Optilab 93909134) nanoAcquity UPLC system (Waters) Trapping column (nanoAcquity Symmetry C18, 5 μm, 180 μm × 20 mm; Waters) Analytical column (nanoAcquity BEH C18, 1.7 μm, 75 μm × 250 mm; Waters) Orbitrap Fusion Lumos Tribrid Mass Spectrometer (ThermoFisher Scientific) The outlet of the column needs to be coupled directly to the Orbitrap Fusion Lumos (ThermoFisher Scientific) using the Proxeon nanospray source. .. SpectronautTM v.14 R v3.6.3 R Studio Server v1.2.5042 Isolating targeted cell populations for proteome analysis In order to avoid contamination of the sample, nitrile gloves should be used throughout all the protocol steps.

Polymerase Chain Reaction:

Article Title: Identifying Cell-Type-Specific Metabolic Signatures Using Transcriptome and Proteome Analyses.
Article Snippet: .. Materials Intestinal crypts from step 17 of Basic Protocol 1 Crypt digestion buffer (see recipe; prepare 3 ml/sample) Phosphate-buffered saline (PBS; PBS Tablets; Gibco, cat. no. 18912014, to be dissolved in 500 ml deionized water; keep on ice) Y-27632 dihydrochloride monohydrate (Abcam ab120129) 2× proteomics lysis buffer (see recipe) 1 M dithiothreitol (DTT; Roth 6908.3) 200 mM iodoacetamide (Sigma I1149); prepare fresh directly before use and keep in the dark (cannot be stored)Gebert et al. 8 of 29 Current Protocols Acetone (Biosolve 0001037801BS), ice-cold HPLC water (Sigma 270733) Protein digestion buffer (see recipe) LysC stock solution (see recipe) Trypsin stock solution (see recipe) 10% trifluoroacetic acid (Biosolve 0020234131BS) Acetonitrile (Biosolve 0001204102BS) Formic acid (Roth 4724.3) HRM kit peptides (Biognosys AG 42896) 50-ml conical tubes (e.g., Corning Falcon) 1.5-ml microcentrifuge tubes (Eppendorf 0030120.086) 37°C water bath Centrifuge with temperature control (Eppendorf 5804R) 70-μm mesh filters Bioruptor PlusTM (Diagenode) Thermomixer (Eppendorf 460-0223E and 460-0220) pH paper (Roth KEE1.1) Waters Oasis® HLB μElution Plate, 30 μm (Waters 186001828BA) Extraction Plate Manifold for Oasis 96-Well Plates (Waters 186001831) Vacuum pump (Gast Manufacturing Inc. DOA P504 PN) Speed vacuum centrifuge (Eppendorf Concentrator Plus) PCR tubes (Ratiolab 8610040) MS vials (VDS Optilab 93909134) nanoAcquity UPLC system (Waters) Trapping column (nanoAcquity Symmetry C18, 5 μm, 180 μm × 20 mm; Waters) Analytical column (nanoAcquity BEH C18, 1.7 μm, 75 μm × 250 mm; Waters) Orbitrap Fusion Lumos Tribrid Mass Spectrometer (ThermoFisher Scientific) The outlet of the column needs to be coupled directly to the Orbitrap Fusion Lumos (ThermoFisher Scientific) using the Proxeon nanospray source. .. SpectronautTM v.14 R v3.6.3 R Studio Server v1.2.5042 Isolating targeted cell populations for proteome analysis In order to avoid contamination of the sample, nitrile gloves should be used throughout all the protocol steps.

Mass Spectrometry:

Article Title: Identifying Cell-Type-Specific Metabolic Signatures Using Transcriptome and Proteome Analyses.
Article Snippet: .. Materials Intestinal crypts from step 17 of Basic Protocol 1 Crypt digestion buffer (see recipe; prepare 3 ml/sample) Phosphate-buffered saline (PBS; PBS Tablets; Gibco, cat. no. 18912014, to be dissolved in 500 ml deionized water; keep on ice) Y-27632 dihydrochloride monohydrate (Abcam ab120129) 2× proteomics lysis buffer (see recipe) 1 M dithiothreitol (DTT; Roth 6908.3) 200 mM iodoacetamide (Sigma I1149); prepare fresh directly before use and keep in the dark (cannot be stored)Gebert et al. 8 of 29 Current Protocols Acetone (Biosolve 0001037801BS), ice-cold HPLC water (Sigma 270733) Protein digestion buffer (see recipe) LysC stock solution (see recipe) Trypsin stock solution (see recipe) 10% trifluoroacetic acid (Biosolve 0020234131BS) Acetonitrile (Biosolve 0001204102BS) Formic acid (Roth 4724.3) HRM kit peptides (Biognosys AG 42896) 50-ml conical tubes (e.g., Corning Falcon) 1.5-ml microcentrifuge tubes (Eppendorf 0030120.086) 37°C water bath Centrifuge with temperature control (Eppendorf 5804R) 70-μm mesh filters Bioruptor PlusTM (Diagenode) Thermomixer (Eppendorf 460-0223E and 460-0220) pH paper (Roth KEE1.1) Waters Oasis® HLB μElution Plate, 30 μm (Waters 186001828BA) Extraction Plate Manifold for Oasis 96-Well Plates (Waters 186001831) Vacuum pump (Gast Manufacturing Inc. DOA P504 PN) Speed vacuum centrifuge (Eppendorf Concentrator Plus) PCR tubes (Ratiolab 8610040) MS vials (VDS Optilab 93909134) nanoAcquity UPLC system (Waters) Trapping column (nanoAcquity Symmetry C18, 5 μm, 180 μm × 20 mm; Waters) Analytical column (nanoAcquity BEH C18, 1.7 μm, 75 μm × 250 mm; Waters) Orbitrap Fusion Lumos Tribrid Mass Spectrometer (ThermoFisher Scientific) The outlet of the column needs to be coupled directly to the Orbitrap Fusion Lumos (ThermoFisher Scientific) using the Proxeon nanospray source. .. SpectronautTM v.14 R v3.6.3 R Studio Server v1.2.5042 Isolating targeted cell populations for proteome analysis In order to avoid contamination of the sample, nitrile gloves should be used throughout all the protocol steps.

Sonication:

Article Title: Genome-wide (ChIP-seq) identification of target genes regulated by BdbZIP10 during paraquat-induced oxidative stress
Article Snippet: Chromatin was prepared using the Zymo-SpinTM ChIP kit (Zymo Research Corp., Irvine, CA) following their modified protocol for isolation of plant chromatin. .. Sonication was performed at high power setting for 40 cycles (30 s on, 30 s off) using a Bioruptor PlusTM (Diagenode Inc., Denville, NJ), yielding a DNA fragment-size range of 200–700 bp. .. The ChIP assay was performed in triplicate ( N = 3) using 12 μg of chromatin and 10 μg of anti-GFP ChIP Grade antibody (Abcam ab290, lot #GR240324–1; www.abcam.com ) to target the bZIP10-GFP protein.

Article Title: Transcription factor Constans-like 4 may regulate tomato fruit ripening by interacting with abscisic acid and ethylene signaling
Article Snippet: .. The sediment obtained was mixed with 0.4 mL of nucleic acid lysis buffer containing protease inhibitors, lysed on ice for 30 min, and sonicated into fragments ranging from 200 to 700 bp with a Bioruptor PlusTM (Diagenode Inc., Denville, NJ) at high power for 40 cycles (30 s on, 30 s off). ..

Article Title: Genome-wide (ChIP-seq) identification of target genes regulated by BdbZIP10 during paraquat-induced oxidative stress.
Article Snippet: Chromatin was prepared using the Zymo-SpinTM ChIP kit (Zymo Research Corp., Irvine, CA) following their modified protocol for isolation of plant chromatin. .. Sonication was performed at high power setting for 40 cycles (30 s on, 30 s off ) using a Bioruptor PlusTM (Diagenode Inc., Denville, NJ), yielding a DNA fragment-size range of 200–700 bp. .. The ChIP assay was performed in triplicate (N = 3) using 12 μg of chromatin and 10 μg of anti-GFP ChIP Grade antibody (Abcam ab290, lot #GR240324–1; www.abcam.com) to target the bZIP10-GFP protein.



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DIAGENODE DIAGNOSTICS bioruptor plustm
Bioruptor Plustm, supplied by DIAGENODE DIAGNOSTICS, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/bioruptor+plustm/bioruptor+pico/10__1016_slash_j__scienta__2024__113865-104-34-36
Average 90 stars, based on 1 article reviews
bioruptor plustm - by Bioz Stars, 2026-10
90/100 stars
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